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Simplified test script, fixed readme

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Rostislav Lán 2 years ago
parent 239c675524
commit b12a0d3e9b
3 changed files with 75 additions and 54 deletions
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61
README.md
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@ -64,7 +64,7 @@ Once all the requirements are installed, the program is ready to use. There are
1. manually list filter names and parameters from command line
```sh
python3 src/main.py res/examples/Palec_P4.tif res/examples/Palec_P4.png 600 denoise_tv_chambolle iterations=1 weight=0.2 median ksize=5
python3 src/main.py res/examples/Palec_P4.tif res/examples/Palec_P4_from_shell.png 600 total_variation weight=0.15 median ksize=5
```
2. from preset saved in a json config file, that can be used to tune and modify existing presetrs, or create new ones
@ -76,7 +76,30 @@ Once all the requirements are installed, the program is ready to use. There are
There is an option to input the filter series as a preset from json configuration file.
```diff
<style>
table {
width: 100%;
}
th, td {
padding: 10px;
font-family: monospace;
width: 50%;
vertical-align: top;
}
</style>
<table>
<thead>
<tr>
<th>General format</th>
<th>Woking example</th>
</tr>
</thead>
<tbody>
<tr>
<td>
<pre><code class="language-json">
{
"preset": [
{
@ -94,11 +117,10 @@ There is an option to input the filter series as a preset from json configuratio
]
...
}
```
For example
```diff
</code></pre>
</td>
<td>
<pre><code class="language-json">
{
"git_example": [
{
@ -112,7 +134,13 @@ For example
}
]
}
```
</code></pre>
</td>
</tr>
</tbody>
</table>
All the filters used and their parameters are described below.
@ -186,12 +214,12 @@ First optional parameter is papilar line height, second rate of curvature along
* General form for curved stl generation
```sh
python3 src/main.py input_file output_file dpi --config config_file preset --stl height_line height_base curvature_x curvature_y
python3 src/main.py input_file output_file dpi --config config_file preset --stl c height_line height_base curvature_x curvature_y
```
* Working example curved stl generation
```sh
python3 src/main.py res/examples/Palec_P4.tif res/examples/Palec_P4_from_preset.png 600 --config config/config.json git_example --stl 2 10 2 2
python3 src/main.py res/examples/Palec_P4.tif res/examples/Palec_P4_from_preset.png 600 --config config/config.json git_example --stl c 2 10 2 2
```
# Generating planar finger model
@ -201,21 +229,26 @@ Optional parameters are model base thickness and papilar lines height, they are
* General form for planar stl generation
```sh
python3 src/main.py input_file output_file dpi --config config_file preset --stl height_line height_base -p
python3 src/main.py input_file output_file dpi --config config_file preset --stl p height_line height_base
```
* Working example planar stl generation
```sh
python3 src/main.py res/examples/Palec_P4.tif res/examples/Palec_P4_from_preset.png 600 --config config/config.json git_example --stl 2 10 -p
python3 src/main.py res/examples/Palec_P4.tif res/examples/Palec_P4_from_preset.png 600 --config config/config.json git_example --stl p 2 10
```
# Mapping to existing finger model
This section will be added later, (if implemented) mapping of fingerprint to a given finger model.
* General form for planar stl generation
```sh
python3 src/main.py input_file output_file dpi --config config_file preset --stl m height_line height_base finger_file
```
# Usage
usage: main.py [-h] [-m | --mirror | --no-mirror] [-p] input_file output_file dpi ([-c | --config config_file preset] | [filters ...]) [-s | --stl height_line height_base | --stl_file height_line curv_rate_x curv_rate_y]
usage: main.py [-h] [-m | --mirror | --no-mirror] input_file output_file dpi ([-c | --config config_file preset] | [filters ...]) [-s | --stl_file p height_line height_base | --stl_file c height_line height_base curv_rate_x curv_rate_y | --stl_file m height_line height_base finger_file]
Program for processing a 2D image into 3D fingerprint.
@ -232,8 +265,6 @@ options:
switch to mirror input image
-s [STL_FILE ...], --stl_file [STL_FILE ...]
create stl model from processed image
-p, --planar, --no-planar
make stl shape planar instead of curved one
-c CONFIG CONFIG, --config CONFIG CONFIG
pair: name of the config file with presets, name of the preset

4
conf/conf.json
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@ -132,11 +132,11 @@
"git_example": [
{
"name": "total_variation",
"weight": 0.01
"weight": 0.15
},
{
"name": "median",
"ksize": 3
"ksize": 5
}
]
}

64
src/test.sh
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@ -24,7 +24,7 @@ config_file=conf/conf.json
# name of preset in conf. file
#presets=("strong" "test-weak" "test-repeat" "test-strong")
presets=("ridge" "weak")
presets=("ridge")
# generate stl files and set generation mode {"planar", "curved", "mapped"}
generate_stl=true
@ -43,46 +43,36 @@ apply_filter() {
for in in ${file_arr[@]}
do
# check that the file exists
if test -f "$in"
then
# append preset name to filename for easier identification, if not generating stl (that would result in very long names)
if $generate_stl; then
out="${in%%${match1}*}${match1}$format"
else
out="${in%%${match1}*}_$preset${match1}$format"
fi
# skip stl files and files with preset name in them
if [[ $in == *".stl"* ]] || [[ $in == *_* ]]; then
((j++))
continue
fi
((i++))
echo -e "|\n|----------------------- File no. $i: $in ------------------------------|\n"
if $generate_stl; then
((i++))
if [[ "$generate_stl_mode" = "planar" ]]; then
python3 $exec_path $in $out $dpi -c $config_file $1 --stl p $height_line $height_base || break
[[ -f "$in" ]] || continue
elif [[ "$generate_stl" = "curved" ]]; then
python3 $exec_path $in $out $dpi -c $config_file $1 --stl c $height_line $height_base $curv_x $curv_y || break
# skip stl files and files with preset name in them
[[ "$in" == *_* ]] && continue
[[ "$in" == *".stl" ]] && continue
((i++))
echo -e "|\n|----------------------- File no. $i: $in ------------------------------|\n"
elif [[ "$generate_stl" = "mapped" ]]; then
pass
if $generate_stl; then
out="${in%%${match1}*}${match1}$format"
case "$generate_stl_mode" in
"planar")
python3 $exec_path $in $out $dpi -c $config_file $1 --stl p $height_line $height_base || break
;;
"curved")
python3 $exec_path $in $out $dpi -c $config_file $1 --stl c $height_line $height_base $curv_x $curv_y || break
;;
"mapped")
python3 $exec_path $in $out $dpi -c $config_file $1 --stl m $height_line $height_base $fp_file|| break
else
;;
*)
echo "Invalid stl generation mode"
break
fi
else
python3 $exec_path $in $out $dpi -c $config_file $1 || break
fi
else
echo "File $file does not exist"
fi
exit 1
;;
esac
else
out="${in%%${match1}*}_$preset${match1}$format"
python3 $exec_path $in $out $dpi -c $config_file $1 || break
fi
done
}

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