Fixed README, updated gitignore

.gitignore

@@ -10,6 +10,7 @@
 
 /doc
 /docs
+/docs/*
 
 /conf
 /conf/*

README.md

@@ -1,8 +1,8 @@
 
 # About this Project
 
-This application has been developed as a part of bachelor's thesis at Brno University of Technology - Faculty of Information Technology.
+This application has been developed as a part of bachelor's thesis at Brno University of Technology - Faculty of Information Technology (BUT FIT).
-The topic of this thesis was Generating a 3D Fingerprint Model from input fingerprint image. 
+The topic of this thesis was **Generating a 3D Fingerprint Model** from input fingerprint image. 
 
 This application consists of two main parts. The first part of the application uses custom filter library to apply image filters to enhance fingerprint images.
 This library consists of several filters imported from image processing modules.
@@ -278,8 +278,8 @@ Image before processing the fingerprint and after applying a presets.
         <th>After</th>
     </thead>
     <tbody>
-        <td><img src="res/example/example_git/example-before.png?raw=true" width="400" /></td>
+        <td><img src="res/examples/example_git/Palec_P4.tif?raw=true" width="400" /></td>
-        <td><img src="res/example/example_git/example-after.png?raw=true" width="400" /></td>
+        <td><img src="res/examples/example_git/Palec_P4.png?raw=true" width="400" /></td>
     </tbody>
 </table>
 
@@ -302,6 +302,7 @@ third the rate of curvature along x axis `curv_rate_x` and the third is the rate
 
     ```
     python3 src/main.py res/examples/Palec_P4.tif res/examples/Palec_P4_from_preset.png 600 --config config/config.json git_example --stl c 2 10 2 2
+    ```
 
 # Generating planar finger model
 
@@ -346,6 +347,7 @@ When in doubt, you can always check the help with:
     python3 src/main.py --help
 
 Which will print out the following message.
+
 ```
 usage: main.py [-h] [-m | --mirror | --no-mirror] input_file output_file dpi ([-c | --config config_file preset] | [filters ...]) [-s | --stl_file p height_line height_base | --stl_file c height_line height_base curv_rate_x curv_rate_y | --stl m height_line iter finger_x finger_y finger_z finger_model [-d | --database database_filename]